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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …
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Len Pennacchio
Lawrence Berkeley National Laboratory … The Deputy of Genomic Technologies serves as the JGI’s primary point of … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast … … 2021-  NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … say about their experiences and what they’ll take with them as they go forward in their careers.   Listed below are the … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having …
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Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal
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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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Hiroshi Otani
… 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Biology of Fungi and Their Bacterial Endosymbionts
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Droplet microfluidics for synthetic biology
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A standard-enabled workflow for synthetic biology.
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of … enzymes.” Gribaldo will be speaking on “Exploration of Metagenomic Data to Understand the Diversity and Evolution of …
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Matt Blow
… the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the Wellcome … as a research scientist on projects to develop functional genomic technologies and to understand genome function in … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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Olpidium, The Key to the Origin of Terrestrial Fungi
JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … question, despite of their well-designed sampling and analysis of their data at the time. Following the …
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