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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint … more than two copies, a condition known as polyploidy. The multiple copies arise from past genome duplication, which …
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Yasuo Yoshikuni
… production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating … transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains., Microbial … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a … of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users … synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who … and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows … energy capture, enhancing atmospheric carbon sequestration into sustainable biomaterials, and developing …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … experience at the JGI. On July 26, 2018, the JGI celebrated the culmination of the fifth summer of its flagship … the Women in STEM campus organization and is involved with multiple outreach programs promoting the advancement of …
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MGM Workshop at Fisabio Summer School
Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … and research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … 4. Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … (uM etc).  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … protocol,  detailed in the journal  Microbiome , combines multiple techniques and was demonstrated using a specific …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of clonally propagated plants to address these questions.” Multiple collection methods were applied to gather the …
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The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate
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