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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… JGI Metabolomics Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy … A: Anyone from anywhere around the world can apply to access the JGI’s resources. Q:  Where can I get information … Reference: Erbiligin et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr …
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … called iPHoP (pronounced “eye-pop”,  freely available online ). It combines and evaluates multiple predictions to … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots … decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to … co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science …
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Nigel Mouncey
… the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost … is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the Society … Secondary Metabolites Program head as well as our JGI Director. Click to learn more about the program's areas of focus, …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a … yeast Saccharomyces cerevisiae , allowing this species to grow better than its closest relative S. paradoxus at … and improve functional annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team …
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … JGI, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial … He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing … genomic changes Serpula lacrymans has undergone in adapting to manmade environments. The Impact Due to its aggressive … to harness other woody substrates other brown rots could access. While S. lacrymans var. shastensis has a similar …
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