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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and development in … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing …
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Novel bacterial clade reveals origin of form I Rubisco
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … ripples through the trees in his backyard. Originally from northern California and one of the first students to … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Igor Grigoriev
DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
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Fungal‐specific transcription factor AbPf2 activates pathogenicity in Alternaria brassicicola
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RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria
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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
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