The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
Results
BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
Green Algae Reveal One mRNA Encodes Many Proteins
From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
