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DAP-seq Drives Robust Mapping of Gene Regulation
… scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … Advancing gene regulation mapping Previous methods to identify where transcription factors (TFs) — the proteins that … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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Tanja Woyke Elected to American Academy of Microbiology
… Woyke’s caliber support the JGI User community in accessing our resources and help them to push the boundaries of energy and …
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A Natural Mechanism Can Turbocharge Viral Evolution
… under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing … by the National Science Foundation’s XSEDE computing resource (award DEB170007), and through a Challenge Grant from … DE-AC02-05CH11231 through the Community Science Program (CSP), the G. Unger Vetlesen and Ambrose Monell Foundations, …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more … the sequencing efforts expanded beyond LANL to include resources from Lawrence Livermore and Lawrence Berkeley … and a hardworking team. He highlighted several important projects the JGI has worked on, from the myriad of omics …
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A More Intuitive Phytozome Interface
… Trying to maintain v12’s codebase and legacy data resources and hardware, while also developing a modern and … above, you can also access all data for these genomes via our BioMart Genome Archive data warehouse, or the JGI Data … restoration. They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on …
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Training the Next Generation of Talent
… challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is … the participating students and enrich the experience of our entire graduate program! At this point the focus has …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to create pipelines, tools and other standardized data resources that the global research community can access and use … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider on  Apple Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist …
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Game On: High School Students Drive Everglades Metagenomics Study
… class at Florida’s Boca Raton Community High School. The course had a defined set of objectives, and started with an … sequenced from the metagenomic soil samples from the four sites tested.  They found Euryarchaeota to be the most … a microbiome announcement that has been submitted to the journal  Environmental Microbiome with significant scientific …
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … Unique Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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Trent Northen
… (16), 567–571 (2019) doi: 10.1038/s41592-019-0465-0. Couradeau E et al. Probing the active fraction of soil … Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director Exceptional Achievement Award … organization during the formation of the Division in 2015-2016. Dr. Northen regularly chairs workshops, organizes …
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Annual Meeting 2027
… this page as further details become available. Sign up for our newsletter to receive updates.    …
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JGI Accepts 17 Proposals for Community Science Program
… been approved through the annual Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the … Berkeley aims to redesign and engineer algae by identifying the algal regulators that could boost lipid …
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