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Draft Genome Sequence of a Terrestrial Planctomycete, Singulisphaera sp. Strain GP187, Isolated from Forest Soil
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Enhanced terrestrial Fe(II) mobilization identified through a novel mechanism of microbially driven cave formation in Fe(III)-rich rocks
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … goal has been for all this new cotton work, and even the original cotton project was to try to bring in molecular … among five allotetraploid cottons, along with noted key fiber development genes. The results indicate remarkably …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he … interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses in …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In … processes unveiled by transcriptomics and proteomics. Our key findings contribute to an increasingly detailed portrait …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … interactions with microbial hosts. The second project, “ A consortium facilitation, coordination, and data management …
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Ken Chu
Ken leads the development and maintenance of analytical tools and user interface components for the IMG family of systems. …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … symbionts, rather than free-living organisms as had been originally thought. The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in …
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