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From Berkeley to Binghamton: Tracking Strawberry Evolution
Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of … four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is complicated because, …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: Cellulose, … skeleton. It’s more complex, and poisons enzymes and the  microbes that make them. It’s known that aerobic fungi, like …
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Scientific Advisory Committee
The Scientific Advisory Committee (SAC) is a board convened by the JGI Director to provide a scientific and … strategic objectives of the JGI. The SAC serves as the Institute's key external advisory panel and advocate of the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop … Identifying and breeding varieties that have high productivity across a range of environments is becoming increasingly … Texas with a shovel,” recalled study co-author David Lowry, who started as a postdoctoral fellow in the Juenger lab and …
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Partnerships: Adopt-A-Genome
… to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Resource Announcements. 2023 12 (10), e00548-23 Whole genome sequence of the denitrifying thermophile … paper . It was definitely interesting going through the whole process of submitting, getting feedback , and all the …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets they look forward to taking back to school.  The interns from this cohort … And of course, I also met a ton of really cool people who do really cool science, and I look forward to keeping …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… his team  announced in  Nature Microbiology an important addition to the synthetic biologist’s toolkit: a technique for  … multiple types of payloads, such as individual genes, whole pathways, genome-editing tools, and reporters.” … advantage of their joint metabolisms. Because, together, microbes can be used to create compounds more efficiently …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, … of saprotrophs, mycorrhizal symbionts, and pathogens, regardless of whether a sample came from the soil below a pine … a tremendous community effort, with over 100 researchers who nominated species for sequencing and then sent DNA and …
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How to Submit Sequencing Samples
… to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports … … Sample Tracking and Status Reports … We look forward to getting your project started! …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership … transcriptome projects such as Expression Atlas and PPRD could help with understanding gene functional roles, but … Juenger and his postdoc Xiaoyu Weng from Univ. of Austin, who previously led work on  Arabidopsis and  Panicum hallii …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular … as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare …
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Nick Everson
… which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab Automation, and … He acts as a resource and provides advice and counsel regarding current DOE, national laboratory, and UC policies and …
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