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Green Algae Reveal One mRNA Encodes Many Proteins
… in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  … The U.S. Department of Energy Joint Genome …
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Tracking the Origins of Methane-Producing Microbes
Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the Emerging …
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A Complex Confection Decoded: Sugarcane Reference Genome
… for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for …
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Refining the Process of Identifying Algae Biotechnology Candidates
… place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The Scenedesmus genome was sequenced and assembled at the JGI. Sara Calhoun in Igor Grigoriev’s team at the JGI led …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is octoploid (eight …
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Computationally Classifying Fungal Lifestyles
As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … paper is the first result of the collaboration with the JGI, where they are partnering with Yasuo Yoshikuni and Ian …
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Picking Up Threads of Cotton Genomics
… and importance in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  Plant Program , both faculty investigators at the …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric …
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