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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard … of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist … learn more about the program's areas of focus, major initiatives and more.  …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the benefit … reinforced by the  Fort Lauderdale Agreement (2003), the JGI recognized the need to engage the community to inform …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … heme availability to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… Register here Book your stay at the conference venue This inaugural event will bring … and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic studies.  This …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal … and share data in PhycoCosm. For genomes not sequenced by JGI, if PIs are interested are working with us please … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Leo Baumgart
… doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and …
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