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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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Increased signal-to-noise ratios within experimental field trials by regressing spatially distributed soil properties as principal components
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Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities … DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter or …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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The Big Deal About Short Plants
… plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Special Initiatives & Programs
… support through the JGI (with the exception of DE-FOA-0003453, which is eligible for BERSS). Available Resources All … instead. Proposals may not exceed 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which … Nelson et al (2022) Wildfire-dependent changes in soil microbiome diversity and function.  Nature Microbiol. …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University … Fellow where he identified a novel apolipoprotein (ApoA5) involved in human and mouse triglyceride metabolism. He …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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JGI-UC Merced Interns Share Their 2021 Experiences
… stories, told through print narratives, videos, a podcast episode, and presentations below. … … … … … … … … … … … … … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete Categorization of …
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Exploring the Diversity of the American Prairie’s Switchgrass
… potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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