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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to determine what genes the …
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JGI Early Career Researchers Featured in mSystems Special Issue
… the authors who offer perspectives on what the next five years of innovation could look like. In one article, … ecological and environmental processes, especially by modifying host cell metabolism and altering cell fitness. As the … studying virus-host dynamics in nature. In the last few years, mapping the planet’s viral diversity has advanced …
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Alabama A&M Interns Access An Abundance of Knowledge
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… data obtained from environmental samples — to identify over 27,000 microbial genes. These genes were identified …
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New Research Sheds Light on Diversity in the Deep Sea
… funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 … Joint Genome Institute (Community Science Program award 339, lead Peter Girguis) for sequencing several of the …
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A Plant Root Atlas for Tracking Developmental Trajectories
… type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 Relevant Links: … Five Berkeley Lab Scientists Receive Prestigious Five-Year Research Grant   … The U.S. Department of Energy Joint …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Olpidium zoospores remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium … able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for phylogenetic reconstruction . We were also … to the sequencing effort by the JGI and ZyGoLife in recent years. With the much more extensive taxonomic and genetic …
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The More the Merrier: Making the Case for Plant Pan-genomes
… more than once, and these events took place a million years apart: the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a more recent … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also …
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I-Min (Amy) Chen
… updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner A, … and ecological metadata. Nucleic acids research Jan 2023 Camargo AP, Call L, Roux S, Nayfach S, Huntemann M, …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… conducted some microscopy studies over the next couple of years, and realized it was a sulfur-oxidizing prokaryote. … the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I thought they were eukaryotes; I didn’t …
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial … active secondary metabolites and helping them identify and describe the functions of the biosynthetic gene … User Facility, is supported under contract DE-AC02- 05CH11231. …
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The Power of One, Amplified
… in, on, and around the planet remain unknown. In recent years, advances in sequencing technologies and bioinformatic … diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from … Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences …
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