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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… of the physical memorabilia that she’s held onto over the years. The DOE brought together the people and resources … the DOE Joint Genome Institute in 1997. Over the next seven years, and in collaboration with researchers at the Stanford … DNA sequence and biology of human chromosome 19 . Nature. 428, 529–535 (2004). doi:10.1038/nature02399 Schmutz, J., …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… suggests this redundancy is protective, a bit like diversifying an investment portfolio. If a stress like wildfire or … this way was challenging, according to Martin. “Twelve years ago, when we mapped the first sequenced RNA from the … Fungal Genomes project changed that. This is a multi-year project in collaboration with the JGI to sequence 1000 …
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JGI@25: Solving the Mystery of the Missing Oil
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Supercharging SIP in the Fungal Hyphosphere
… They form mutually beneficial relationships with over 80% of land plants, which means they offer a lot of insights …
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Expanding Virophage Diversity
… the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new …
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JGI Interns at UC Merced Earn CAMP Merit Awards
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Back in the Lab: the 2023 Summer Intern Experience
… the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the …
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Polar Phytoplankton Need Zinc to Cope with the Cold
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… rapid environmental changes. Researchers were able to identify specific genes that allow the algae to adapt to sudden … more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more … Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of Energy …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in the … filter the data for the major capsid protein (MCP) to identify NCLDV viruses. JGI researchers previously applied this …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it …
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Refining the Process of Identifying Algae Biotechnology Candidates
… be refined for best results, often by starting with identifying the right ingredients. Researchers collaborating … factor regulating genes and enzymes that can modify composition of algal lipids. This knowledge could be … pipeline could help researchers accelerate efforts to identify and characterize more industrially relevant algal …
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