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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can produce an … which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … that allows the 8X variety to be a generalist is a valuable resource towards the effort to generate climate resilient …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … JGI users — both primary, data-generating users, as well as secondary, data-downloading users — have access to … aims to create pipelines, tools and other standardized data resources that the global research community can access and …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … small genomes, short life cycles and can be easily transformed, traits that make them easy to work with … B. hybridum accessions produced infertile F1 descendants (first offspring of the parents), posing the question if they …
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Introducing New Members of the JGI User Executive Committee
… of members. Each of the researchers had particular reasons for wanting to serve on the UEC. Hatzenpichler, who studies … “Large sections of the community are either unaware that [public but use-restricted] exist on [the JGI data portal] … systems, noted that she would like to help advance JGI efforts aimed at “understanding complex communities and …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… concepts.” Patrinos went on to explain that the JGI’s very first project — the revolutionary work of the human genome … be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more … drafted human genome was produced by a joint effort between public and private sectors and it is still seen today as a …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … high-dimensional data (the 136 tetranucleotide frequencies for each of the 12,063 metagenomes) and reduce it into two …
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Expanding Virophage Diversity
… computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated … rhizosphere, wastewater, and even animal and human (for the first time) gut and taxonomically classified into 27 … & Applications (VEGA) Symposium. The work also used resources of the National Energy Research Scientific …
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Nick Everson
… of JGI Operations which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab … the DOE Joint Bioenergy Institute and the Operations Deputy for LBNL’s Biological Systems & Engineering Division. Prior … to his tenure with Berkeley Lab, he served in the US Navy for 6 years as a submarine electrician and a financial …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using … Biology. (Wayne Keefe/Berkeley Lab) For example, the JGI first used CRAGE to engineer domesticated bacterial strains …
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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to access … which remains unknown and uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished genome derived from an uncultured …
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JGI on the 2020 Highly Cited Researchers List
… highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … gene related to seed dispersal in wild populations for the first time. I-Min Chen ,  Natalia Ivanova ,  Nikos Kyrpides … in  Nature Biotechnology that led to the release of 52,515 publicly-available microbial draft genomes generated from …
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