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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … this work sets up protocols and pipelines that other teams can use around the world. These tools give researchers … mapping to the fungal genomes at the JGI,” Martin said. An effort called the 1000 Fungal Genomes project changed that. …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Insider podcast minisode. To date it is the single largest effort to provide a cataloged and curated culture and genome … (XPD3002). With that sample, the Salk Institute team was able to engineer and test a ribonuclease capable of …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced … on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with their mentors to …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in the future, the evolutionary past … organism processes both carbon and nitrogen. This research team combined computational and experimental approaches to …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous effort, an international consortium recommended specific … the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome …
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Cultivating Symbiotic Antarctic Microbes
The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with … to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal symbiotic …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who … synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions … bioeconomy.  This year’s project goals range from improving crop productivity for bioenergy through enhanced red-light …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and … metagenome-assembled genomes (MAGs) reconstructed from this effort, the team was still unable to link 20,000 major …
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … in the coming years the Wang group will continue its effort to explore new genome and computational technologies …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … researchers for bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional … desired final output. Being successful in my computational efforts assured me that I had the capabilities to learn …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. Department of Energy Office of Science …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … and Tanja Woyke, were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . …
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