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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … Wales (UNSW)-Sydney professor Rick Cavicchioli compared two strains of haloarchaea from different Antarctic lakes. … through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing … to long-read metagenome assemblies by JGI and uploaded to IMG? A:  Depending on the project setup, we can include as …
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Open Frameworks Training the Next Generation of Scientists
… services and analysis—to participants. Over the past two years, Myco-Ed has been used in 15 individual classrooms … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … (Microbiomes In Computational Research Opportunities Network), a National Science Foundation-funded program, for …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published in the journal Science . … its effort to produce a full sequence of the Chlamydomonas genome in the early-2000s. She and other researchers came …
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Toward More Efficient Artificial Photosynthesis
… Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … variants. ECR enzymes are capable of fixing CO2 many times faster than RuBisCo, the most common CO-2 fixing enzyme in … ‘SYBORG’), as well as the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … switchgrass is polyploid. This means it contains more than two copies of the genome , which can have pronounced ecological and … More genome copies in switchgrass leads to increased climate …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … all versions of Phytozome), can always be access in one of two ways: From the BioMart Genome Archive data warehouse.  …
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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