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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication Manager Sarah …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … Brandon Imstepf一were selected to continue their research projects through the DOE RENEW grant initiative when school …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences … from the JGI and EMSL in one proposed research project. In the same proposal, researchers can also request … JGI : For general questions, contact  Christa Pennacchio , Project Management Office. For questions about the …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … — but the experts we were able to work with on this project to ask questions about structure and function,” … work well for  in vitro  and  in vivo experiments.  In a project led by Blaby, through what is now the  Community …
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User Support Analysis Group
… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of … been somewhat invisible to the sampling experiments probing Earth’s ecosystems. Viruses rarely grow well in …
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