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Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing
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DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing.
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director … evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity of plants … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell University, NY PhD in Physics, Cornell …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Opening doors to physical sample tracking and attribution in Earth and environmental sciences
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … in proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … conditions. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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JGI Workshops at 33rd Fungal Genetics Conference
… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of … Workshop Steven Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and …
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Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
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