Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
Results
Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Visualizing metagenomic and metatranscriptomic data: A comprehensive review
Analyze Data
Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
BAYESIAN SPATIAL-TEMPORAL MODELING OF ECOLOGICAL ZERO-INFLATED COUNT DATA.
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
