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Bacteria and Fungi Divvy Up the Work in Forest Floor
Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for … from their soil samples. This gene expression dataset was particularly important for characterizing fungal …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Forming Scientific Connections and Building Community
… months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while … ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. Also, …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … No. DE-AC02-05CH11231. … P. psychrophila on PhycoCosm … Datasets …
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Nikos Kyrpides
… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. … BA in Biology, Aristotle University of Thessaloniki, …
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Anna Ratner
… is working on the display and visualization of large omics data. …
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The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold
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JGI@25: Strengthening Soybean
… and that’s going really well. And having the sequence data available for us to enable that research will have a … on Phytozome … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … Fungal Datasets …
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Jinghua Jenny Huang
… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … screens for characterization of new enzymes and use the data we generated to train machine learning models now …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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