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Microbial Genomics & Metagenomics (MGM) Workshop
…   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to …
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Making a Lichen Together
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed … partners. Yet the team found none. Instead, the partners stubbornly maintained complete autonomy; they can be isolated … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went on to … “While I never said this out loud,” Drell said, speaking to users and staff at the JGI’s 2022 User Meeting, "I think I … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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Massie S. Ballon
JGI’s strategic vision, the Institute’s staff and user community. … LBNL Biosciences Area Organizational …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and … results showed that these fungi may be able to provide tools beyond biomass breakdown, extending into biochemical …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
I started this, uh, summer internship was working with big data, but something that I learned from this program was how … And I’m excited to take that with me, along with other tools that I can use to, um, perform computational biology.  …
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Understanding Wildfire Recovery, Starting in Soil
… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …
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Alabama A&M Interns Access An Abundance of Knowledge
I really hope to gain laboratory experience working with tools as well as laboratory machines in hopes of …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. “Piloting access to this … such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering …
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A Plant Root Atlas for Tracking Developmental Trajectories
… and combining the information with previously published datasets. The work was  recently published in the journal  … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … “This represents the largest integration of single-cell datasets in plants and provides a foundation for still …
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