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Triggering Morel Fruiting
… external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves …
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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
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Nikos Kyrpides
… of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the …
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First Monoploid Reference Sequence of Sugarcane
… of chromosomes (they are “polyploid”) and their complex genomes are more difficult to sequence and assemble, in turn … now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a … crop that very efficiently converts solar energy into plant biomass, which can then be crushed to extract the …
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Finding the Fermenters
… browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also … the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… has been at the forefront of Covid-19 research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was …
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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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Toward More Efficient Artificial Photosynthesis
… cycle. The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials … was enabled in part through the Community Science Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome … (Berkeley Lab). Supporting the Erb lab through the CSP Functional Genomics call, the JGI synthesized library of …
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Leo Baumgart
… of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing … regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional … in bacterial gene regulation." Nature methods 18, no. 12 (2021): 1499-1505. Hasty, Jeff, Leo Alexander Baumgart, Scott …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has served as just that on a … the organism’s DNA code in tandem with a closely-related plant pathogen species, Phytophtora sojae, which imperils … provided a framework essential to understanding how these plant pathogens cause disease and how to control them. …
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Better Genome Editing for Bioenergy
… This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh
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