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Missing microbial eukaryotes and misleading meta-omic conclusions
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Maast: genotyping thousands of microbial strains efficiently
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He … Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal genomics resource.  …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … normally would kill the moss may hold clues to how these carbon sink environments can continue to hold onto their … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences … Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … (FICUS) program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … a modified version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … automated aspects of a commonly-used process for studying microbial communities, with results published in the  … Soil microorganisms play a critical role in sequestering carbon and mitigating greenhouse gas emissions, and …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … and can serve no more than two consecutive terms. In late 2021, the JGI launched a solicitation for nominations for … stages. The election period concluded on December 23, 2021. …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … economic value as both biofuel feedstock and their role in carbon sequestration. Poplar trees grow quickly in a variety …
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