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A toolkit for microbial community editing
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Microbial Ecology in a Changing Climate
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Microbial adaptability in changing environments
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … Bik is a recipient of the Community Science Program (CSP) New Investigator call. Through membership in the UEC, … worked closely with both the Fungal & Algal Program and the Microbial Program over the past decade in gene regulatory …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more … to S.C.); the Key R&D Program of Zhejiang Province (grant 2021C02009 to S.X.) and Zhejiang Provincial Natural Science …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the entire data life cycle through resources including the JGI portals, and our broader data ecosystem. …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … normally would kill the moss may hold clues to how these carbon sink environments can continue to hold onto their … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the …
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The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … a modified version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … ecosystem functions in processes ranging from nutrient cycling to plant health and growth. Developing a scalable … genomes, particularly from incredibly complex soil microbial communities, is crucial to understanding how these …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … automated aspects of a commonly-used process for studying microbial communities, with results published in the  … Soil microorganisms play a critical role in sequestering carbon and mitigating greenhouse gas emissions, and …
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