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… it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as … what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five …

The study shows that figure is likely closer to a mere 250,000 years — with many key colonization events in the … a variety of new environments.  This all started roughly 250,000 years ago, when eelgrass traveled across the ocean … Energy Joint Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of …

… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  … email inquiries, sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … dhesion and  r estriction  e ndonuclease domains—of up to 8,500 amino acids in length. These were actively synthesized …

… data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …

In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on …

Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral … ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified …

… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …

… of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship … microbiomes. Tringe was also Kaze’s mentor during her 2018 internship, in which she explored anthropogenic impacts …