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Multiple displacement amplification compromises quantitative analysis of metagenomes
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Simon Roux
JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … targets of hypermutation in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum …
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The Case for Conservation
… help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … four times the size of the next largest chromosome. As the study first author Carey put it, these sex chromosomes first … Sigma-Xi Grant-In-Aid of Research, and Society for the Study of Evolution Rosemary Grant Award to S.B.C.; NSF …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … chemicals not typically found in oceans or soils.  A recent study published in  The ISME Journal     focused on a class … nitrogen, and break down organic and inorganic compounds. Studying their diverse metabolic capabilities offer insights …
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JGI Early Career Researchers Featured in mSystems Special Issue
… issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … and experimental approaches with the aim of eventually studying virus-host dynamics in nature. In the last few …
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Learning to Look
… expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … the way we currently isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … plant biomass. Here, cud-chewers like goats, sheep and cows share an important talent. In their herbivorous lives, … processing. “So if you peer inside a poop sample, or a rumen sample, you’re going to find beautiful diversity.” …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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