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Mining Metagenomes for Cas Proteins
… mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … at the National Energy Research Scientific Computing Center , a DOE Office of Science User Facility at Lawrence …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … carbon and nitrogen cycles, break down plant mass (think biofuels ), enhance plant health, cause diseases, and … are available on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. As part of a comparative …
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MGM Workshop at Fisabio Summer School 2025
… and seminars as well as practical hands-on sessions in bioinformatics and biostatistics Several sessions will be devoted … training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and …
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Microbial Genomics & Metagenomics (MGM) Workshop
… familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope Carbon-13, … and more comparable analysis. A Data Standard for SIP  Recently, Purdue researcher and JGI user Roli Wilhelm set out …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA Synthesis Science … the Community Science Program’s  Functional Genomics call for proposals . The proposal call is open year-round, but … driven his lab’s focus on guide RNA library generation and development and its applications. “I moved to UC Davis in …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … JGI expanded its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for … v4 features over 15 million viral genomes, and  this most recent version is six times larger than the previous one . To …
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Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome
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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
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Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater
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Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
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