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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), shows methanogenesis is not …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of … (MAGs) were recovered, most of them archaea. The Quake lab had previously collaborated with the JGI on a proposal …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea … of microbial communities (metagenomics) and a chemical labelling approach. The Impact Altiarchaea are abundant and …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that …
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Disclaimer
NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system … or security personnel. … With respect to documents available from this server, neither the United States Government …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the past … diversity. Because most microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI … who offer perspectives on what the next five years of innovation could look like. In one article, Micro-Scale … (DNA SIP) relies on incubating DNA with isotopically-labeled compounds to link active microbes with specific …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology …
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Party in the Rhizosphere
There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds that plants secrete through their … Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage pass. …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The … is a remote hot spring, deep within the British Columbia backcountry (Purcell Wilderness Conservancy Provincial Park … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), employed single-cell sequencing …
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