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From Competition to Cooperation
… walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which degrade plant detritus. Despite the different modes of nutrition, many of these … in moving toward functional genomics studies to learn more about the inner workings of plant-host and …
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Supporting Global Research into Actinomycetes
… special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species described within the group … actinomyces, especially Streptomyces and many other related organisms, requires using more specialized tools, skills and … in the JGI Natural Prodcast podcast , where she talks about this community resource. ) “Most people study …
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Kjiersten Fagnan
… Research Division. As a postdoc, her research focused on stable and accurate computational methods for … Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing … and user-centered design efforts. Dr. Fagnan was on the organizing committees for the ASCR Integrated Research …
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Webinar: SIP technologies at EMSL and JGI
… and the JGI’s Rex Malmstrom provided background on the various isotope-related technologies available at JGI and EMSL … those found with >10% atom enrichment of 13C in your target organism in order to separate them by DNA-SIP. For various … C13 and sort of the isotope of proteomics, what about doing this with metabolites at EMSL? A:  The answer to …
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Crysten Blaby-Haas
… Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. She is spearheading the development of a joint user capability between the JGI and Molecular Foundry for … of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in …
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MGM Workshop at Fisabio Summer School 2025
… Several sessions will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes …
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MGM Workshop at Fisabio Summer School 2026
… Several sessions will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes … (IMG/M) system, presented by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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JGI Launches Latest Strategic Plan
… sequence to the public data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the … of the JGI and KBase in the heart of the Lab’s 200-acre campus—with the big move from leased space in Walnut Creek, … prospective partners to generate awareness of and clarity about the JGI’s strategic directions,” said Mouncey. “In …
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Jay Keasling
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of … tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, …
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Statement on the Use of Genomics Data
… data policies. Since completion of the HGP, the JGI has sustained its commitment to uploading sequence data generated … has managed the growing corpus of sequence data for all organisms as a public good available to all users for any … policies for gaining a better understanding of how changes may affect data-producing users and other users. After the …
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Help from Citrus’ Bitter, Hardier Cousin
… disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  Citrus … resistance to citrus greening disease. Trifoliate orange may be a plant of bitter fruit, yet sweet are its genetic …
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