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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)
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Doubling Down on Known Protein Families
… things when it comes to energy cycles — turning biomass into things like ethanol or hydrogen, or solar energy into … higher because it is very hard to have 100 sequences from different locations or habitats that align very well, … majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences evaded …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle …
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IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
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Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean
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Marianne Buscaglia
… affiliate researcher who uses metagenomics to study giant viruses in cold marine environments and is interested in …
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Clarence Le
… researcher who identifies and analyzes novel clades of RNA viruses and determines novel viral gene functions that may …
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Effects of Polar Light Cycle on Microbial Food Web
A long-running time-series study offers a first glimpse into a full season’s cycle of this polar environment. This … the way nutrients flow through the ecosystem of Ace Lake is different than nearby Antarctic lakes of similar origin. The … observations regarding the contributions of algae and viruses to the ecosystem were noted, but require further …
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Fishing for Novel Cellulose Degraders
… the “hook” of fluorescence-activated cell sorting to sort cells into several small pools, followed by whole genome … leading to the sequencing of genomes from either individual cells or consortia of cells,” can be applied. The approach …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … related to understanding how the interactions between viruses and their host microbes impact the regulation of … viral genomes. This includes (i) classifying viruses into groups that can be compared across studies, (ii) …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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