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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site … This research was supported by grants from the Simons …
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Gut Fungi: Unexpected Source of Novel Chemicals
… poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. … and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … at Pacific Northwest National Laboratory. The team’s research at both the JGI and EMSL was enabled by the …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … bean’s close relative, as a biofuel. To this end, a team of researchers led by Jeremy Schmutz of the JGI and the … P. vulgaris on Phytozome … Plant Datasets …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated … As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — experimental … The U.S. Department of Energy Joint Genome Institute, a DOE …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … This work was supported by the Department of Energy (DOE) Office of Biological and Environmental Research (BER) and is a contribution of the Scientific Focus …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … entities,  further outlined in the journal  Nucleic Acids Research in November 2022.  One of GOLD’s strengths has been … U.S. Department of Energy Joint Genome Institute … of Energy operated [DE-AC02-05CH11231]; National Energy Research Scientific Computing Center, which is supported by …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine … hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … provides new views of these relationships.  Recently , researchers used population genomics to find that while …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … or C-fern, specifically has been studied in plant research laboratories and plant biology courses across the … The work conducted by the US Department of Energy Joint … to S.C.; grant 41571049 to Y. Wu); China Agricultural Research Systems (grant CARS-05 to S.C.); the Key R&D …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New … The U.S. Department of Energy Joint Genome Institute, a DOE … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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JGI Announces 2025 New Investigator Portfolio
… Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian … Flavia Winck Vischi, Jennifer Wisecaver, Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a … a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … clearer picture of how burned ecosystems return to health, researchers have taken a look at microbial genomes across a …
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