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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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JGI@25: From Life at the Extremes to Editing Genomes
… accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting iterative searches … Such proteins have been adapted for therapeutic application development by Mammoth Biosciences, one of several companies … scoutRNA Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: …
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From Competition to Cooperation
… genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how … saprotrophs in the forest. White rot can break down the cellulose, hemicellulose, and lignin in plant cell walls, while brown rot cannot break down the lignin but use …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… weedy plants and bring them back to the lab. The weedy grass was green millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation … a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led …
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Tracing the Evolution of Shiitake Mushrooms
… on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. … Specifically, many species had very similar plant cell wall degrading enzymes (PCWDEs), including …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… driven his lab’s focus on guide RNA library generation and development and its applications. “I moved to UC Davis in … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… thus allowing them to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. … into genes critical for roles including plant growth and cell wall development.  M. polymorpha is also among one of the …
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Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria
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Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
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