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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Chlamydomonas has this related protein that’s also causing DNA damage,” Merchant said, “that something is wrong with …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … that are still vital to facilitate the assembly of small DNA fragments into larger and coherent pieces called contigs …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … planet’s microbial diversity is key to understanding the roles of microorganisms in regulating nutrient cycles, as … acknowledge the significant efforts to collect and extract DNA from these samples, many of which come from unique, …
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JGI Welcomes New UEC Members
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that … affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the … who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, respectively. To view the …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Data Generation Platforms (Sequencing, Single Cell, DNA Synthesis, and Metabolomics) as well as Research & …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … multiple times in order to obtain enough zoospores. DNA and RNA samples generated from the zoospores were then …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) hosted a pitch event promoting fully-supported summer research collaborations through … Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI DNA Synthesis Platform Ben Bowen and Katherine Louie for the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants … to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … a single RNA piece that recognizes a particular area in the DNA, to determine which targets might benefit from an …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes … team of researchers has identified the major metabolic roles of constituent microbes, publishing their findings in …
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