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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of … freely available online ). It combines and evaluates multiple predictions to reliably match viruses with their …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more … the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species … way of collecting them is through a method called Multiple Displacement Amplification, and most genomes that …
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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Uncovering Novel Genomes from Earth’s Microbiomes
… gene clusters for novel secondary metabolites for multiple applications. Despite advances in sequencing … diversity. Because most microbes cannot be cultivated under laboratory conditions, their genomes can’t be … of the microbial communities in the environmental samples without needing to isolate individual organisms, using …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … multi-terabyte datasets assembled for the first time with  MetaHipMer , taking advantage of scalable parallel …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … plants don’t fully decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat … ), a DOE Office of Science User Facility, is supported under contract no. DE-AC02-05CH11231. …
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Tanja Woyke Elected to American Academy of Microbiology
… in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records … to decode genomes of bacteria and archaea from previously understudied clades, establishing their evolutionary … the boundaries of energy and environmental genomics.” Along with Woyke, two JGI users were also elected to the AAM: …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship … in research and JGI has been the perfect experience in understanding the requirements and responsibilities of being …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced … of the common gardens. “Gardeners and farmers fully understand that when you move plants outside of their native … of clonally propagated plants to address these questions.” Multiple collection methods were applied to gather the …
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