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JGI@25: From Life at the Extremes to Editing Genomes
… Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics … , serve researchers with unique areas of focus and data and computational needs. Over its 23-year history, JGI has …
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Enlarging Windows into Understanding Gene Functions
… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … through multiDAP, which allows researchers to conduct comparative analyses across the genomes of multiple species …
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JGI Hosts GPU Hackathon in May
… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … Officer Kjiersten Fagnan of the upcoming event. “The tools we use to process and analyze these data are diverse … and Oak Ridge National Laboratory (ORNL) to make sure our computational workload can leverage future HPC systems – our …
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Genome Sequence of Hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. cholerae▿
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Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
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Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … both carbon and nitrogen. This research team combined computational and experimental approaches to look at how … of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized …
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Oleaginous Yeast Biology Elucidated With Comparative Transcriptomics
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis … in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. Registration for …
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