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Evolution of a Fungal Gene Expression Regulator
… 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … help researchers find ways to protect poplar and other crops being considered for bioenergy feedstock development. … specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference genomes …
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Webinar: SIP technologies at EMSL and JGI
… go from start to finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time … the bulk level, if that helps at all.  6. Q:How would field applications of the rhizoboxes mentioned in Jim Moran’s … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Frederik Schulz
… and enrichment metagenomics for terrestrial protists. These approaches enable novel insights into the diversity and … Selected Publications …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …
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Nikos Kyrpides
… of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen … CRISPR-Cas9 systems snip DNA. This could eventually lead to applications allowing for genome editing in RNA, rather than …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… As seen with many commonly cultivated commercial crops such as wheat, peanut, oat, banana, potato, etc., … quantitative genetic, landscape, and niche modeling approaches, we contrasted the diversity of 4X and 8X …
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Better Genome Editing for Bioenergy
… that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct …
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Reference genome sequence of the model plant Setaria
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Genome sequence of the model rice variety KitaakeX
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Genome Project Standards in a New Era of Sequencing
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Genome sequence of the model mushroom Schizophyllum commune
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