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SIPs with Standards
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You Can Move, But You Can’t Hide
… Mobile genetic elements (MGEs) are genetic entities that seek to replicate themselves and spread from cell to cell. … affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by killing … also optimized for speed, i.e., it can identify millions of new viruses and plasmids quickly, even in massive datasets. …
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VEGA Symposium
… Michael Baym, Harvard Medical School Laurence Ettwiller, New England Biolabs Kathryn Kauffman, University at Buffalo … (Zymo Research Corp) Vivek Mutalik (LBNL) Peter Weigele (New England Biolabs) …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so … have better, easier access to these viral genomes. The new database was called IMG/VR. It featured samples from …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… $1.4 million annually.  The team is working on developing new microbial strains that can synthesize other bio-based … New Process Uses Microbes to Create Valuable Materials from …
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SPRUCE-ing Up Science
… fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial … mediate Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… ways that her team is looking to use CRISPR-Cas9 to solve new problems. According to Doudna, the CRISPR-Cas9 … are building on this discovery to address a wide range of new questions — from basic research, like learning how to … them in plants other than maize including black cottonwood, rice,  Arabidopsis ,  Mimulus and Amborella (in …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for … at Lawrence Berkeley National Laboratory, to create the database. JGI provided metagenome and metatranscriptome …
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An Earth Month Look at Sustainability Efforts at the JGI
… of Earth Month events throughout April. This year, a new group at the Lab, the Sustainable Garden Club, hosted a … laid in Walnut Creek before people moved into the new building,” Fulton said. For example, even before moving … Initiative is a great team of collaborators for testing new initiatives like this. “So when we have a new idea, we …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… conditions.  The team plans to monitor and regularly update the Metagenome Stability Diagram. The tool is hosted …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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