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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as … at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
Learn more
Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that … ride to Berkeley from the Peninsula is still good. “I noticed right away,” said Ellen Ford about Ray’s personal …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A … keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … of extreme weather events such as hurricanes and droughts. Another one began in late 2013, when a large patch of warm …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 … branches of eukaryotes (organisms with a nucleus). In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence and …
Learn more
A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 … branches of eukaryotes (organisms with a nucleus). In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence and …
Learn more
A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality … A reference genome for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. … pipeline and techniques. High quality primary assembly not only includes a full representation of the diversity …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … available datasets. They’ve discovered that DGRs are not only widespread, but also surprisingly active. In …
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Emiley Eloe-Fadrosh
… 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … computational approaches, more and more virus sequences are being recovered and identified from environmental samples … the virus-host boundary clearly defined using functional annotation methods, it was possible to distinguish between …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components … into  biofuels and bioproducts. If anaerobic fungi could be used to effectively modify lignin without oxygen and make … It’s that third component, lignin, that has historically been less of a resource to be extracted and more of an …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … However, AMF and the microbial communities they inhabit are notoriously difficult to study, due to the difficulty …
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How Maize Makes An Antibiotic Cocktail
The Science Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. Even though scientists have … into a bonanza of diverse structures. The Impact Zealexins belong to a class of chemicals called terpenoids, which have … transferring just four genes encoding these enzymes to another plant, such as  Sorghum bicolor — a  candidate …
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