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A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Simon Roux
… JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts …
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A Natural Mechanism Can Turbocharge Viral Evolution
… For a virus with a “head-tail” morphology, this means using proteins on its tail fibers to latch onto a specific … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and … support for the IsoGenie Project (samples and metadata from Stordalen Mire, Sweden) by the Genomic Science …
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Genetic determinants of endophytism in the Arabidopsis root mycobiome
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The GreenCut2 Resource, a Phylogenomically Derived Inventory of Proteins Specific to the Plant Lineage*
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Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups
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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
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