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Georg Rath
… JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of … of representatives from JGI’s science and production sequencing programs. …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Protocol for condition-dependent metabolite yield prediction using the TRIMER pipeline
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice example of …
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When “The Blob” Made It Hotter Under the Water
… marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of … ocean known as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern … model aligns with several other studies on the potential effects of warming oceans on the microbial populations and …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting … DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. Dr. Charles Gawad has been supported for this work …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the grasses. In addition to … Brachypodium distachyon is a small annual grass that is well suited to …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a …
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Introduction: Sequences and consequences
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Targeted single‐cell sequencing
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JGIota: Looking Back at Sequencing for Soybeans
… have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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