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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … This work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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JGI@25: Studying Sorghum’s Survival Skills
… biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Better Genome Editing for Bioenergy
… included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s … bp) that directs the endonuclease where to cut, but these “single guide” RNAs (sgRNAs) can be faulty. Without a good …
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Marine Microbe Contains Multitudes
… species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … metatranscriptomes), as well as the genomes of single cells of the uncultivated SAR324. The constellation …
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … workflow that reduces the time and cost associated with this purification step, and Baumgart continued and … analyses across the genomes of multiple species in a single experiment. “Effectively, you can identify conserved …
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Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic … and the gut. To better understand the dynamics of this molecule, researchers developed the first chemiluminescent … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, …
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