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CheckV can help researchers assess virus sequence fragments and data … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …

Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts comparative … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …

Microbial cells infected by viruses undergo metabolic … changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in … for User Science (FICUS) collaborative science initiative between the  U.S. Department of Energy (DOE) …

Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two … of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria did; …

A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make plants more resilient to …

Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific … developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …

For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year … JGI supports, include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the …

As waters warm due to climate change, corals are in mortal … a photosynthetic microalgae, and a little-characterized microbiome. When warm waters stress corals, it might be …

June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical … research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …

Kaushal Sharma, one of five Antioch High School rising … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the …

… of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for … in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … that I had the capabilities to learn coding languages and harness them to unlock statistical patterns in big data. …

…   To understand virus-host dynamics, computation helps fill in … it predicted many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, such as terrestrial …