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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … and the abundance of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help … don’t have the energy to make complex compounds called natural products . Yet, combing through the genomes of four …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have … beans take longer to cook, but it also depletes their iron content. “Cooking time is important if you have to go out … for pinto beans. These beans cook faster, retain their iron content and have a longer shelf-life — up to four years. …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … of single cell sequencing to assess the variation within natural microbial populations. Each of the three sequencing …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among … rate of microbial communities. Because microbial metabolism affects the biogeochemical cycling of carbon, nitrogen, and …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and … diverse environments. The Science Cyclic di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria … microbial cellulose production and biofilm formation, which affects a number of environments, including plants, soil, …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … the traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Robert Bowers
… Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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