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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome …
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Novel function of the human presqualene diphosphate phosphatase as a type II phosphatidate phosphatase in phosphatidylcholine and triacylglyceride biosynthesis pathways
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among … of innovation could look like. In one article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … and mentor is what we strive for,” Visel said. Practical Applications for Fungi Wint began working on the project …
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … samples. Simon Roux co-organized the Viral EcoGenomics & Applications (VEGA) Symposium series. The online seminars …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … tool.” Keynote Talk Title: CRISPRology — The Science and Applications of  Genome Editing (Virtual) Jennifer Doudna is … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large … Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly sorted, whole …
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Decoding Yellowstone’s Microbial Mats
… it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed …
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