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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by viruses in … fragments. Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of …
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Alabama Agricultural & Mechanical University Internship Program
Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with their mentors and fellow … the JGI more confident and ready to tackle real-world scientific issues. Our interns say their experiences allowed them …
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. … show the ability to respire with or without oxygen, fix nitrogen, and break down organic and inorganic compounds. … Studying their diverse metabolic capabilities offer insights into how microbial processes might be harnessed for …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … made publicly available on relevant JGI portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) … also be added during the proposal lifecycle based on scientific need. Proposals are considered complete when all …
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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation
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Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. … revealed by comparative genomics.  Nature Microbio 2:17087. Mondo et al (2017)  Widespread adenine N6-methylation …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … for terrestrial protists. These approaches enable novel insights into the diversity and important ecological roles … DAAD (“German Academic Exchange Service”) scholarship (2008-2009) VDI (“Association of German Engineers”) award for …
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Uri Neri
… computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. … others that RNA viruses are actually interesting and not just "spicy messenger RNA", and that somewhere in the mess …
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