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Waiting to Respire
… Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Agency declared the North Railroad Avenue Plume (NRAP) a Superfund site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Pinning Down a Piece of Photosynthesis
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … provide a list of machine parts, and an idea of their groupings.  One pivotal effort along these lines came from UC … heme site — the exciting structural component that sets this molecule apart. To better understand how the …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … regulatory “switches” in species beyond traditional models. Updates to DAP-seq build upon the previous version in … with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s availability to users is a …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national … Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … nor does it direct the JGI CIO or the JGI Director on how to operate and manage informatics efforts at the JGI. …
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Tanja Woyke
… at the Eberhard Karls University Tübingen (Germany), Dr. Woyke pursued her postdoctoral research at the DOE Joint … of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist … and an Adjunct Professor at the University of California, Merced's School of Natural Sciences since 2015. Prospective …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with … as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic ways. In … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly …
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EARLY FLOWERING 3 and Photoperiod Sensing in Brachypodium distachyon
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Gut Fungi: Unexpected Source of Novel Chemicals
… to be too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts … species has revealed, for the first time, that this group is unexpectedly powerful: they can whip up dozens of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, … had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 …
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Better Genome Editing for Bioenergy
… in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … could be used for renewable fuel. In fact, lipids can make up more than 90 percent of the microbe’s dry weight. In …
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