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From Berkeley to Binghamton: Tracking Strawberry Evolution
… as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic ways. In … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is octoploid (eight …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic …
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EARLY FLOWERING 3 and Photoperiod Sensing in Brachypodium distachyon
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … eminent leaders in the field of microbiology and are relied upon for authoritative advice and insight on critical issues … Adjunct Professor at the University of California, Merced. Woyke received a 2014 Berkeley Lab Director’s Award …
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Gut Fungi: Unexpected Source of Novel Chemicals
… species has revealed, for the first time, that this group is unexpectedly powerful: they can whip up dozens of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory. The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 … August 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their …
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Better Genome Editing for Bioenergy
… at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … could be used for renewable fuel. In fact, lipids can make up more than 90 percent of the microbe’s dry weight. In … negative if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a fabricated ecosystem – an …
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Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
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Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of … outputs, such as data, publications and software. The JGI supports the entire data life cycle, and embeds metadata and …
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Science Programs
… The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … for them. Their concerted efforts help maximize the JGI’s impact in advancing both user science and the DOE …
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