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Adina Howe
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High‐resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities
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A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains.
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Leo Baumgart
… the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … operationalizing new genomic technologies, integrating automated liquid handling and bioinformatics pipelines to … wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei …
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JGI@25: Using Team Science to Build Communities Around Data
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the Advanced Photon … something that any of the user facilities would cover. Q6: How can I maximize my chance for success? A: Reach out ahead …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … The team identified 15 core genes shared across all fungi, and found that some of these genes have moved from … dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular level. …
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Trent Northen
… 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved … on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, leaving … kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of infecting different host species? Or, do they tend to specialize, infecting just a single host? Another wrinkle … affect their prey in different ways. They have the capacity to kill outright, replicating so thoroughly that they lyse … then allowed the team to ask, for the 34 hosts they found, how prevalent in the mat are their viruses? The abundance of …
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The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
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The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling
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