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… between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. … University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging …

… with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division.. As a postdoc, her research focused on … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan …

… out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to … define the scope of work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). … work performed at the JGI is initiated via the Work Initiation Process (WIP) interface. To submit a proposal, users must …

Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded by …

… expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of … and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … at Pacific Northwest National Laboratory. The team’s research at both the JGI and EMSL was enabled by the …

In honor of the JGI's 25th anniversary in 2022, we have … human chromosomes: Lawrence Berkeley National Laboratory researchers were studying Chromosome 5, which contains about … user facility. The staff and resources shifted to offering genomic science capabilities for energy and environmental …

… shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … to be impossible.  And yet, little chemical clues left some researchers wondering if perhaps the accepted narrative …

… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled … high-quality datasets, enabling global insights from modeling, machine learning, and subsequent experiments.  … …

Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … happening on and in forest soil also better enriches models of global carbon and nitrogen cycling, both on the …

CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are being …

Metagenomic datasets could help map out microbial diversity … of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the …

… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on …