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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… of 100 times the size of what has typically been associated with viruses, while the genomes of large viruses may be only … 10-fold from just 205 genomes, redefining the phylogenetic tree of giant viruses. Metabolic Reprogramming a Common Strategy for Large and Giant Viruses Another …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… of California Santa Barbara. So plants don’t break down without a fight, but it’s an important battle to fine-tune. … could serve as the starting material for a wide range of fuels and chemicals. To get to that point, industrial … the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the enzymes these organisms use …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing … will be sent out. The main benefit is professional growth and development for the developers, and the code …
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JGI Scientists Pen Genome Watch Articles
Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  … Du Toit, senior editor for  Nature Reviews Microbiology, with an unusual opportunity: would JGI researchers consider … at the Nature family of journals noticed Woyke would be coming to town and invited her to stop by their offices as …
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Frederik Schulz
A. et al. 2023. Identification of mobile genetic elements with geNomad. Nature Biotechnology . Schulz et al. 2022. … et al. (2017) Towards a balanced view of the bacterial tree of life. Microbiome. 5 (1), 1-6 Google Scholar … Senior …
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The minimum information about a genome sequence (MIGS) specification
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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … and Energy Leadership … Novak, V, et al. Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen … p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et al.  SIMILE enables alignment of tandem mass …
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Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway
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Editorial: Cell Free Biocatalysis for the Production of Bioproducts
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From … Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns Tahirah …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… nearly 30 major previously uncharted branches of the tree of life. A senior scientist at Lawrence Berkeley …
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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a set of … an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … experience in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes …
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