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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of …
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JGI on the 2021 Highly Cited Researchers List
… climate adaptations with switchgrass biology. The information could be useful toward the DOE’s interest in … past year, through programs including the JGI-UC Merced Genomics Internship Program and the DOE Office of Science … hosted two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
Phytozome. The combination of field data and genetic information has allowed the research team to associate climate … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, … what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized hundreds of  … work well in further experiments, so she could glean information about their specific function, filling in our …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … of biology. You know, I’ve personally been able to work in genomics, in protein structure, in synthetic biology, …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with the JGI’s growing efforts in establishing plant and fungal single-cell and spatial transcriptomic technologies, … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , researchers used population genomics to find that while archaeal hitchhikers may often …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the … microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … & Geobiology Environmental Omics (ECOGEO) RCN, USA; AgreenSkills programme, France; Meta-omics of microbial …
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Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress
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Expression and characterization of spore coat CotH kinases from the cellulosomes of anaerobic fungi (Neocallimastigomycetes)
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide …
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